SOFTWARE

Web Tools And Web Applications

a-madman screenshot
  • CirComPara A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data
  • Reference: CirComPara: a multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data. Non-Coding RNA. Special Issue: Bioinformatics Softwares and Databases for Non-Coding RNA Research. 2017, 3(1), 8.
a-madman screenshot
  • MAGIA2 web tool for the integrative analysis of miRNA and genes expression data
  • Reference: MAGIA2: from miRNA and genes expression data integrative analysis to microRNA-transcription factor mixed regulatory circuits (2012 update).. NUCLEIC ACIDS RES. 2012 Jul;40(Web Server issue):W13-21. Epub 2012 May 21..
a-madman screenshot
  • MAGIA MiRNA And Genes Integrated Analysis web tool
  • Reference: MAGIA, a web-based tool for miRNA and Genes Integrated Analysis. NUCLEIC ACIDS RES. 2010 Jul 1;38 Suppl:W352-9.
a-madman screenshot
  • A-MADMAN Annotation-based Microarray Data Meta-ANalysis tool
  • Reference: A-MADMAN: Annotation-based microarray data meta-analysis tool. BMC Bioinformatics. 2009 Jun 29;10:201
MOST screenshot
  • MOST Extraction of motifs in DNA sequences
  • Reference: Detecting seeded motifs in DNA sequences. NUCLEIC ACIDS RES.
IDEG6 screenshot
  • IDEG6.2 Identification of differentially expressed genes in multiple tag sampling experiments
  • Reference: IDEG6: a web tool for detection of differentially expressed genes in multiple tag sampling experiments. PHYSIOL GENOMICS. 2003; 12(2): 159-62

Programs

REEF screnshot
  • REEF Find chromosomal regions in which a specific features class is enriched
  • Reference: REEF: searching REgionally Enriched Features in genomes. BMC BIOINFORMATICS. 7: 453.
IDG6.1 screenshot
  • IDEG6.1 Identification of differentially expressed genes
  • Reference: IDEG6: a web tool for detection of differentially expressed genes in multiple tag sampling experiments. PHYSIOL GENOMICS. 2003; 12(2): 159-62