ruditapes_lrc33291

Name: ruditapes_lrc33291

Description: 40s ribosomal protein s20

>ruditapes_lrc33291
GCAAATTCTCACGGTAACCGTCCTTTCACGCCGCCATTTCTACGTAGGAAAGTCGCTGGC
TCACCACTGTTCAAAGATTTTTATTTTGTCTTTGATTAAGTCGGCCAGATAATAAACATG
TCTTACAAAGATACTAAAAGCTCCCACTGATGAGGCCCCTATCCACAGGATCAGGATCAC
ACTTACCAGCAGAAACGTAAAAAGTCTGGAAAAAGTGTGTGCTGACCTGATCAAAGGTGC
CAAGGAAAAGAACCTCAAGGTCAAGGGACCAGTACGTATGCCAACTAAAATCCTCAGGAT
TACAACCAGGAAAACACCTTGTGGAGAAGGTTCCAAGACCTGGGATAGATTTCAGATGCG
TATTCACAAGCGTCTGATTGATCTTCACAGTCCAAGTGAGATTGTCAAACAGATCACCTC
CATCAGTATAGAACCTGGAGTCGAGGTTGAGGTCACCATCGCTGACGCGTAGATTTTCTC
CCCTTGAACTTGTCAATAGTGGAGTAACAATAAAAAAAATTGCAAAAGC

Assembly

Get all reads as txt Get contigs plus reads as txt

Gene Ontology

Molecular Function
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome

Biological Process
GO:0006412	translation

Cellular Component
GO:0015935	small ribosomal subunit

Blast Descriptions

BLAST alignments with nr database

gi\|40643004\|emb\|CAD91428.1\|	ribosomal protein S20 [Crassostrea gigas]	217	4.60691e-55
gi\|146189571\|emb\|CAM91787.1\|	hypothetical protein [Platynereis dumerilii]	214	2.28639e-54
gi\|188572397\|gb\|ACD65105.1\|	putative 40S ribosomal protein RPS20 [Novocrania anomala]	213	5.09354e-54
gi\|22203726\|gb\|AAM94275.1\|	ribosomal protein S20 [Chlamys farreri]	213	8.68826e-54
gi\|166952373\|gb\|ABZ04269.1\|	ribosomal protein rps20 [Lineus viridis]	212	1.13472e-53
gi\|158187842\|gb\|ABW23210.1\|	ribosomal protein rps20 [Eurythoe complanata]	211	1.93554e-53
gi\|188572484\|gb\|ACD65148.1\|	putative 40S ribosomal protein RPS20 [Phoronis muelleri]	211	2.5279e-53
gi\|20805825\|gb\|AAM28852.1\|AF503586_1	ribosomal protein S20 [Branchiostoma belcheri tsingtaunese]	209	9.606e-53
gi\|260797215\|ref\|XP_002593599.1\|	hypothetical protein BRAFLDRAFT_284108 [Branchiostoma florid...	209	1.25458e-52
gi\|226372446\|gb\|ACO51848.1\|	40S ribosomal protein S20 [Rana catesbeiana]	207	3.65028e-52
gi\|147905470\|ref\|NP_001079407.1\|	similar to ribosomal protein S20 [Xenopus laevis] >gi\|133883...	207	3.65028e-52
gi\|52346122\|ref\|NP_001005106.1\|	MGC89921 protein [Xenopus (Silurana) tropicalis] >gi\|4990377...	207	3.65028e-52
gi\|160550177\|gb\|ABX44793.1\|	putative 40S ribosomal protein RPS20 [Flustra foliacea]	206	8.13197e-52
gi\|224046266\|ref\|XP_002198037.1\|	PREDICTED: similar to MGC82136 protein [Taeniopygia guttata]	206	1.06207e-51
gi\|126321362\|ref\|XP_001379639.1\|	PREDICTED: similar to 40S ribosomal protein S20 [Monodelphis...	206	1.06207e-51
gi\|124300827\|dbj\|BAF45909.1\|	ribosomal protein S20 [Solea senegalensis]	206	1.06207e-51
gi\|118086993\|ref\|XP_428540.2\|	PREDICTED: similar to ribosomal protein S20 [Gallus gallus]	206	1.06207e-51
gi\|148234332\|ref\|NP_001086372.1\|	MGC82136 protein [Xenopus laevis] >gi\|49522926\|gb\|AAH75180.1...	206	1.06207e-51
gi\|86355133\|dbj\|BAE78801.1\|	ribosomal protein S20 [Pelodiscus sinensis]	206	1.06207e-51
gi\|185135786\|ref\|NP_001117836.1\|	putative 40S ribosomal protein 20S protein [Oncorhynchus myk...	206	1.06207e-51

Blast Alignments

                
                    gi|40643004|emb|CAD91428.1| ribosomal protein S20 [Crassostrea gigas]  
                        
                            KAPTDEAPIHRIRITLTSRNVKSLEKVCADLIKGAKEKNLKVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRL 217
                            KAP DEAPIHRIRITLTSRNVKSLEKVCADLIKGAKEK+LKVKGPVRMPTK+LRITTRKTPCGEGSKTWDRFQMRIHKRL 
                            KAPQDEAPIHRIRITLTSRNVKSLEKVCADLIKGAKEKSLKVKGPVRMPTKVLRITTRKTPCGEGSKTWDRFQMRIHKRL 88
                        
                            IDLHSPSEIVKQITSISIEPGVEVEVTIADA 248
                            IDLHSPSEIVKQITSISIEPGVEVEVTIADA 
                            IDLHSPSEIVKQITSISIEPGVEVEVTIADA 119
                        
                
                    gi|146189571|emb|CAM91787.1| hypothetical protein [Platynereis dumerilii]  
                        
                            KAPTDEAPIHRIRITLTSRNVKSLEKVCADLIKGAKEKNLKVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRL 217
                            KAP +EAPIHRIRITLTS+NVKSLEKVCADLI+GAK+KNLKVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRL 
                            KAPAEEAPIHRIRITLTSKNVKSLEKVCADLIRGAKDKNLKVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRL 89
                        
                            IDLHSPSEIVKQITSISIEPGVEVEVTIADA 248
                            IDLHSPSEIVKQITSISIEPGVEVEVTIADA 
                            IDLHSPSEIVKQITSISIEPGVEVEVTIADA 120
                        
                
                    gi|188572397|gb|ACD65105.1| putative 40S ribosomal protein RPS20 [Novocrania anomala]  
                        
                            KAPTDEAPIHRIRITLTSRNVKSLEKVCADLIKGAKEKNLKVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRL 217
                            KAP +E  IHRIRITLTSRNVKSLEKVCADLIKGAKEKNLKVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRL 
                            KAPVEETTIHRIRITLTSRNVKSLEKVCADLIKGAKEKNLKVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRL 89
                        
                            IDLHSPSEIVKQITSISIEPGVEVEVTIADA 248
                            IDLHSPSEIVKQITSISIEPGVEVEVTIADA 
                            IDLHSPSEIVKQITSISIEPGVEVEVTIADA 120
                        
                
                    gi|22203726|gb|AAM94275.1| ribosomal protein S20 [Chlamys farreri]  
                        
                            KAPTDEAPIHRIRITLTSRNVKSLEKVCADLIKGAKEKNLKVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRL 217
                            KAP +EAPIHRIRITLTSRNVKSLEKVCADLIKGAK+K LKVKGPVRMPTK+LRITTRKTPCGEGSK+WDRFQMRIHKRL 
                            KAPAEEAPIHRIRITLTSRNVKSLEKVCADLIKGAKDKQLKVKGPVRMPTKVLRITTRKTPCGEGSKSWDRFQMRIHKRL 87
                        
                            IDLHSPSEIVKQITSISIEPGVEVEVTIADA 248
                            IDLHSPSEIVKQITSISIEPGVEVEVTIADA 
                            IDLHSPSEIVKQITSISIEPGVEVEVTIADA 118
                        
                
                    gi|166952373|gb|ABZ04269.1| ribosomal protein rps20 [Lineus viridis]  
                        
                            KAPTDEAP-IHRIRITLTSRNVKSLEKVCADLIKGAKEKNLKVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKR 216
                            KAPTDEAP IHRIRITLTSRNVKSLEKVCADLI+GAKEK+LKVKGPVRMPTK+LRITTRKTPCGEGSKTWDRFQ+RIHKR 
                            KAPTDEAPTIHRIRITLTSRNVKSLEKVCADLIRGAKEKHLKVKGPVRMPTKVLRITTRKTPCGEGSKTWDRFQLRIHKR 89
                        
                            LIDLHSPSEIVKQITSISIEPGVEVEVTIADA 249
                            LIDLHSPSEIVKQITSISIEPGVEVEVTIADA 
                            LIDLHSPSEIVKQITSISIEPGVEVEVTIADA 121
                        
                
                    gi|158187842|gb|ABW23210.1| ribosomal protein rps20 [Eurythoe complanata]  
                        
                            KAPTDEAPIHRIRITLTSRNVKSLEKVCADLIKGAKEKNLKVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRL 217
                            KAP +EA IHRIRITLTSRNVKSLEKVCADLI+GAKEKNLKVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRL 
                            KAPAEEATIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRL 89
                        
                            IDLHSPSEIVKQITSISIEPGVEVEVTIADA 248
                            IDLHSPSEIVKQI SISIEPGVEVEVTIADA 
                            IDLHSPSEIVKQIISISIEPGVEVEVTIADA 120
                        
                
                    gi|188572484|gb|ACD65148.1| putative 40S ribosomal protein RPS20 [Phoronis muelleri]  
                        
                            KILKAPTDEAPIHRIRITLTSRNVKSLEKVCADLIKGAKEKNLKVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIH 208
                            K  KAP +EA IHRIRITLTSRNVKSLEKVC+DLIKGAK+KNLKVKGPVRMPTK LRITTRKTPCGEGSKTWDRFQMRIH 
                            KDAKAPVEEATIHRIRITLTSRNVKSLEKVCSDLIKGAKDKNLKVKGPVRMPTKTLRITTRKTPCGEGSKTWDRFQMRIH 85
                        
                            KRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 242
                            KRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 
                            KRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119
                        
                
                    gi|20805825|gb|AAM28852.1|AF503586_1 ribosomal protein S20 [Branchiostoma belcheri tsingtaunese]  
                        
                            KAPTDEAPIHRIRITLTSRNVKSLEKVCADLIKGAKEKNLKVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRL 217
                            KAP +E  IHRIRITLTSRNVKSLEKVCADLI+GAKEKNL+VKGPVRMPTKILRITTRKTPCGEGSKTWDR+QMRIHKRL 
                            KAPMEETQIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLQVKGPVRMPTKILRITTRKTPCGEGSKTWDRYQMRIHKRL 91
                        
                            IDLHSPSEIVKQITSISIEPGVEVEVTIADA 248
                            IDLHSPSEIVKQITSISIEPGVEVEVTIADA 
                            IDLHSPSEIVKQITSISIEPGVEVEVTIADA 122
                        
                
                    gi|260797215|ref|XP_002593599.1| hypothetical protein BRAFLDRAFT_284108 [Branchiostoma florid...  
                        
                            KAPTDEAPIHRIRITLTSRNVKSLEKVCADLIKGAKEKNLKVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRL 217
                            KAP +E  IHRIRITLTSRNVKSLEKVCADLI+GAKEKNL+VKGPVRMPTK+LRITTRKTPCGEGSKTWDR+QMRIHKRL 
                            KAPMEETQIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLQVKGPVRMPTKVLRITTRKTPCGEGSKTWDRYQMRIHKRL 91
                        
                            IDLHSPSEIVKQITSISIEPGVEVEVTIADA 248
                            IDLHSPSEIVKQITSISIEPGVEVEVTIADA 
                            IDLHSPSEIVKQITSISIEPGVEVEVTIADA 122
                        
                
                    gi|226372446|gb|ACO51848.1| 40S ribosomal protein S20 [Rana catesbeiana]  
                        
                            KAPTD-EAPIHRIRITLTSRNVKSLEKVCADLIKGAKEKNLKVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKR 216
                            KAP D E  IHRIRITLTSRNVKSLEKVCADLI+GAKEKNLKVKGPVRMPTK LRITTRKTPCGEGSKTWDRFQMRIHKR 
                            KAPVDSEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKTWDRFQMRIHKR 88
                        
                            LIDLHSPSEIVKQITSISIEPGVEVEVTIADA 249
                            LIDLHSPSEIVKQITSISIEPGVEVEVTIADA 
                            LIDLHSPSEIVKQITSISIEPGVEVEVTIADA 120
                        
                
                    gi|147905470|ref|NP_001079407.1| similar to ribosomal protein S20 [Xenopus laevis] >gi|133883...  
                        
                            KAPTD-EAPIHRIRITLTSRNVKSLEKVCADLIKGAKEKNLKVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKR 216
                            KAP D E  IHRIRITLTSRNVKSLEKVCADLI+GAKEKNLKVKGPVRMPTK LRITTRKTPCGEGSKTWDRFQMRIHKR 
                            KAPVDQEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKTWDRFQMRIHKR 88
                        
                            LIDLHSPSEIVKQITSISIEPGVEVEVTIADA 249
                            LIDLHSPSEIVKQITSISIEPGVEVEVTIADA 
                            LIDLHSPSEIVKQITSISIEPGVEVEVTIADA 120
                        
                
                    gi|52346122|ref|NP_001005106.1| MGC89921 protein [Xenopus (Silurana) tropicalis] >gi|4990377...  
                        
                            KAPTD-EAPIHRIRITLTSRNVKSLEKVCADLIKGAKEKNLKVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKR 216
                            KAP D E  IHRIRITLTSRNVKSLEKVCADLI+GAKEKNLKVKGPVRMPTK LRITTRKTPCGEGSKTWDRFQMRIHKR 
                            KAPVDQEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKTWDRFQMRIHKR 88
                        
                            LIDLHSPSEIVKQITSISIEPGVEVEVTIADA 249
                            LIDLHSPSEIVKQITSISIEPGVEVEVTIADA 
                            LIDLHSPSEIVKQITSISIEPGVEVEVTIADA 120
                        
                
                    gi|160550177|gb|ABX44793.1| putative 40S ribosomal protein RPS20 [Flustra foliacea]  
                        
                            KAPTDEAPIHRIRITLTSRNVKSLEKVCADLIKGAKEKNLKVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRL 217
                            K P +E PIHRIRITLTSRNVKSLEKVC DLIKGAKEKNLKVKGPVRMPTK LRITTRKTPCGEGSKTWDRFQM+IHKRL 
                            KGPAEEVPIHRIRITLTSRNVKSLEKVCGDLIKGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKTWDRFQMKIHKRL 89
                        
                            IDLHSPSEIVKQITSISIEPGVEVEVTIADA 248
                            IDL SPSEIVKQITSISIEPGVEVEVTIADA 
                            IDLVSPSEIVKQITSISIEPGVEVEVTIADA 120
                        
                
                    gi|224046266|ref|XP_002198037.1| PREDICTED: similar to MGC82136 protein [Taeniopygia guttata]  
                        
                            KAPTD-EAPIHRIRITLTSRNVKSLEKVCADLIKGAKEKNLKVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKR 216
                            KAP + E  IHRIRITLTSRNVKSLEKVCADLI+GAKEKNLKVKGPVRMPTK LRITTRKTPCGEGSKTWDRFQMRIHKR 
                            KAPVEQEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKTWDRFQMRIHKR 88
                        
                            LIDLHSPSEIVKQITSISIEPGVEVEVTIADA 249
                            LIDLHSPSEIVKQITSISIEPGVEVEVTIADA 
                            LIDLHSPSEIVKQITSISIEPGVEVEVTIADA 120
                        
                
                    gi|126321362|ref|XP_001379639.1| PREDICTED: similar to 40S ribosomal protein S20 [Monodelphis...  
                        
                            KAPTD-EAPIHRIRITLTSRNVKSLEKVCADLIKGAKEKNLKVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKR 216
                            KAP + E  IHRIRITLTSRNVKSLEKVCADLI+GAKEKNLKVKGPVRMPTK LRITTRKTPCGEGSKTWDRFQMRIHKR 
                            KAPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKTWDRFQMRIHKR 88
                        
                            LIDLHSPSEIVKQITSISIEPGVEVEVTIADA 249
                            LIDLHSPSEIVKQITSISIEPGVEVEVTIADA 
                            LIDLHSPSEIVKQITSISIEPGVEVEVTIADA 120
                        
                
                    gi|124300827|dbj|BAF45909.1| ribosomal protein S20 [Solea senegalensis]  
                        
                            KAPTD-EAPIHRIRITLTSRNVKSLEKVCADLIKGAKEKNLKVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKR 216
                            KAP + E  IHRIRITLTSRNVKSLEKVCADLI+GAKEKNLKVKGPVRMPTK LRITTRKTPCGEGSKTWDRFQMRIHKR 
                            KAPVETEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKTWDRFQMRIHKR 88
                        
                            LIDLHSPSEIVKQITSISIEPGVEVEVTIADA 249
                            LIDLHSPSEIVKQITSISIEPGVEVEVTIADA 
                            LIDLHSPSEIVKQITSISIEPGVEVEVTIADA 120
                        
                
                    gi|118086993|ref|XP_428540.2| PREDICTED: similar to ribosomal protein S20 [Gallus gallus]  
                        
                            KAPTD-EAPIHRIRITLTSRNVKSLEKVCADLIKGAKEKNLKVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKR 216
                            KAP + E  IHRIRITLTSRNVKSLEKVCADLI+GAKEKNLKVKGPVRMPTK LRITTRKTPCGEGSKTWDRFQMRIHKR 
                            KAPVEQEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKTWDRFQMRIHKR 119
                        
                            LIDLHSPSEIVKQITSISIEPGVEVEVTIADA 249
                            LIDLHSPSEIVKQITSISIEPGVEVEVTIADA 
                            LIDLHSPSEIVKQITSISIEPGVEVEVTIADA 151
                        
                
                    gi|148234332|ref|NP_001086372.1| MGC82136 protein [Xenopus laevis] >gi|49522926|gb|AAH75180.1...  
                        
                            KAPTD-EAPIHRIRITLTSRNVKSLEKVCADLIKGAKEKNLKVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKR 216
                            KAP + E  IHRIRITLTSRNVKSLEKVCADLI+GAKEKNLKVKGPVRMPTK LRITTRKTPCGEGSKTWDRFQMRIHKR 
                            KAPVEQEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKTWDRFQMRIHKR 88
                        
                            LIDLHSPSEIVKQITSISIEPGVEVEVTIADA 249
                            LIDLHSPSEIVKQITSISIEPGVEVEVTIADA 
                            LIDLHSPSEIVKQITSISIEPGVEVEVTIADA 120
                        
                
                    gi|86355133|dbj|BAE78801.1| ribosomal protein S20 [Pelodiscus sinensis]  
                        
                            KAPTD-EAPIHRIRITLTSRNVKSLEKVCADLIKGAKEKNLKVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKR 216
                            KAP + E  IHRIRITLTSRNVKSLEKVCADLI+GAKEKNLKVKGPVRMPTK LRITTRKTPCGEGSKTWDRFQMRIHKR 
                            KAPVEQEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKTWDRFQMRIHKR 88
                        
                            LIDLHSPSEIVKQITSISIEPGVEVEVTIADA 249
                            LIDLHSPSEIVKQITSISIEPGVEVEVTIADA 
                            LIDLHSPSEIVKQITSISIEPGVEVEVTIADA 120
                        
                
                    gi|185135786|ref|NP_001117836.1| putative 40S ribosomal protein 20S protein [Oncorhynchus myk...  
                        
                            KAPTD-EAPIHRIRITLTSRNVKSLEKVCADLIKGAKEKNLKVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKR 216
                            KAP + E  IHRIRITLTSRNVKSLEKVCADLI+GAKEKNLKVKGPVRMPTK LRITTRKTPCGEGSKTWDRFQMRIHKR 
                            KAPVEAEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKTWDRFQMRIHKR 88
                        
                            LIDLHSPSEIVKQITSISIEPGVEVEVTIADA 249
                            LIDLHSPSEIVKQITSISIEPGVEVEVTIADA 
                            LIDLHSPSEIVKQITSISIEPGVEVEVTIADA 120

FY694ZS02F3B67	FY694ZS02HOD2S	FY694ZS02HZUG1	FY694ZS02I4IUE	FYX81E202J0I03	FYX81E202IY5AL
FYX81E202IXJWZ	FYX81E202GY5OV	FYX81E202HYQR8