SELECTED PUBLICATIONS
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Bortoluzzi S, Bisognin A, Biasolo M, Guglielmelli P, Biamonte F, Norfo R, Manfredini R, Vannucchi AM.
Characterisation and discovery of novel miRNAs and moRNAs in JAK2V617F mutated SET2 cells
BloodBlood. 2012 Jan 5. [Epub ahead of print]
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Bortoluzzi S, Biasiolo M, Bisognin A.
microRNA-offset RNAs (moRNAs): by-product spectators or functional players?
Trends In Molecular Medicine.2011 Sep;17(9):473-4. Epub 2011 Jun 21.
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Biasiolo M, Sales G, Lionetti M, Agnelli L, Todoerti K, Bisognin A, Coppe A, Romualdi C, Neri A, Bortoluzzi S.
Impact of host genes and strand selection on miRNA and miRNA* expression.
PLoS One.2011;6(8):e23854. Epub 2011 Aug 31. Epub 2011 Jun 21.
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Milan M, Coppe A, Reinhardt R, Cancela LM, Leite RB, Saavedra C, Ciofi C, Chelazzi G, Patarnello T, Bortoluzzi S, Bargelloni L.
Transcriptome sequencing and microarray development for the Manila clam, Ruditapes philippinarum: genomic tools for environmental monitoring.
BMC Genomics.. 2011 May 12;12:234.
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Lenzi L, Facchin F, Piva F, Giulietti M, Pelleri MC, Frabetti F, Vitale L, Casadei R, Canaider S, Bortoluzzi S, Coppe A, Danieli GA, Principato G, Ferrari S, Strippoli P.
TRAM (Transcriptome Mapper): database-driven creation and analysis of transcriptome maps from multiple sources.
BMC Genomics.. 2011 Feb 18;12(1):121.
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Coppe A*, Pujolar JM*, Maes GE, Larsen PF, Hansen MM, Bernatchez L, Zane L, Bortoluzzi S. (2010)
Sequencing, de novo annotation and analysis of the first Anguilla anguilla transcriptome: EeelBase opens new perspectives for the study of the critically endangered European eel.
BMC Genomics.. Nov 16;11(1):635.. *Equally contributing first author
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Sales G*, Coppe A*, Bisognin A, Biasiolo M, Bortoluzzi S, Romualdi C (2010).
MAGIA, a web-based tool for MiRNA and Genes Integrated Analysis.
Nucleic Acids Res. Jul 1;38 Suppl:W352-9.. *Equally contributing first author
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Sales G, Coppe A, Bicciato S, Bortoluzzi S, Romualdi C.
Impact of probe annotation on the integration of miRNA-mRNA expression profiles for miRNA target detection.
Nucleic Acids Res. 38(7):e97. Epub 2010 Jan 13.
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Biasiolo M*, Forcato M*, Possamai L, Ferrari F, Agnelli L, Lionetti M, Todoerti K, Marchiori M, Bortoluzzi S, Bicciato S. (2010)
Critical Analysis of Transcriptional and Post-Transcriptional Regulatory Networks in Multiple Myeloma.
PACIFIC SYMPOSIUM ON BIOCOMPUTING. 2010:397-408. *Equally contributing first author
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Lionetti M*, Biasiolo M*, Agnelli L, Todoerti K, Mosca L, Fabris S, Sales G, Lambertenghi Deliliers G, Bicciato S, Lombardi L, Bortoluzzi S, Neri A. (2009)
Identification of microRNA expression patterns and definition of a microRNA/mRNA regulatory network in distinct molecular groups of multiple myeloma.
Blood. 114:20-26. *Equally contributing first author.
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Bisognin A, Coppe A, Ferrari F, Risso D, Romualdi C, Bicciato S and Bortoluzzi S. (2009)
A-MADMAN: Annotation-based MicroArray Data Meta-ANalysis tool.
BMC Bioinformatics. 10:201
- Coppe A, Ferrari F, Bisognin A, Danieli GA, Ferrari S, Bicciato S and Bortoluzzi S. (2009)
Motif discovery in promoters of genes co-localized and co-expressed during myeloid cells differentiation.
Nucleic Acids Res.. 37:533.
- Ferrari F, Bortoluzzi S, Coppe A, Sirota A, Safran M, Shmoish M, Ferrari S, Lancet D, Danieli GA and Bicciato S. (2007)
Novel definition files for human GeneChips based on GeneAnnot.
BMC BIOINFORMATICS. 8:446.
- Ferrari F, Bortoluzzi S., Coppe A, Basso D, Bicciato S, Zini R, Gemelli C, Danieli Ga, Ferrari S. (2007).
Genomic expression during human myelopoiesis.
BMC GENOMICS. 8: 1471-2164.
- Coppe A, Danieli GA, Bortoluzzi S (2006)
REEF: searching REgionally Enriched Features in genomes.
BMC BIOINFORMATICS. 7: 453.
- Romualdi C, De Pittà C, Tombolan L, Bortoluzzi S, Sartori F, Rosolen A, Lanfranchi G (2006)
Defining the gene expression signature of rhabdomyosarcoma by meta-analysis.
BMC Genomics. 7:287
- Bortoluzzi S, Scannapieco P, Cestaro A, Danieli GA, Schiaffino S. (2006)
Computational reconstruction of the human skeletal muscle secretome.
PROTEINS. 62: 776-792
- Pizzi C, Bortoluzzi S, Bisognin A, Coppe A, Danieli GA.
Detecting seeded motifs in DNA sequences.
NUCLEIC ACIDS RES. 2005; 33(15): e135
- Bortoluzzi S, Coppe A, Bisognin A, Pizzi C, Danieli GA.
A Multistep Bioinformatic Approach Detects Putative Regulatory Elements In Gene Promoters.
BMC BIOINFORMATICS. 2005; 6(1): 121
- Bortoluzzi S, Bisognin A, Romualdi C, Danieli GA.
Novel genes, possibly relevant for molecular diagnosis or therapy of human rhabdomyosarcoma, detected by genomic expression profiling.
Gene. 348:65-71.
- Bisognin A, Bortoluzzi S, Danieli GA.
Detection of chromosomal regions showing differential gene expression in human skeletal muscle and in alveolar rhabdomyosarcoma.
BMC BIOINFORMATICS. 2004; 5(1): 68.
- Bortoluzzi S, Romualdi C, Bisognin A, Danieli GA.
Disease-genes and intracellular protein networks.
PHYSIOL GENOMICS. 2003; 15: 223-227
- Romualdi C, Bortoluzzi S, D'alessi F, Danieli GA.
IDEG6: a web tool for detection of differentially expressed genes in multiple tag sampling experiments.
PHYSIOL GENOMICS. 2003; 12(2): 159-62
- Gabellini N, Bortoluzzi S, Danieli GA, Carafoli E.
Control of the Na+/Ca2+ exchanger 3 promoter by cyclic adenosine monophosphate and Ca2+ in differentiating neurons.
J NEUROCHEM. 2003; 84(2): 282-93
- Gabellini N, Bortoluzzi S, Danieli GA, Carafoli E.
The human SLC8A3 gene and the tissue-specific Na+/Ca2+ exchanger 3 isoforms.
GENE. 2002; 298(1): 1-7
- Gabellini N, Bortoluzzi S, Danieli GA, Carafoli E.
The gene promoter of human Na+/Ca2+ exchanger isoform 3 (SLC8A3) is controlled by cAMP and calcium.
ANN NY ACAD SCI. 2002; 976: 282-4
- Romualdi C, Bortoluzzi S, Danieli GA.
Detecting differentially expressed genes in multiple tag sampling experiments: comparative evaluation of statistical tests.
HUM MOL GENET. 2001; 10(19): 2133-41
- Bortoluzzi S, D'alessi F, Romualdi C, Danieli GA.
Differential expression of genes coding for ribosomal proteins in different human tissues.
BIOINFORMATICS. 2001; 17(12): 1152-7
- Rampazzo A, Pivotto F, Occhi G, Tiso N, Bortoluzzi S, Rowen L, Hood L, Nava A, Danieli GA.
Characterization of C14orf4, a novel intronless human gene containing a polyglutamine repeat, mapped to the ARVD1 critical region.
BIOCHEM BIOPH RES CO. 2000; 278(3): 766-74
- Bortoluzzi S, D'alessi F, Danieli GA.
A computational reconstruction of the adult human heart transcriptional profile.
J MOL CELL CARDIOL. 2000; 32(11): 1931-8
- Bortoluzzi S, D'alessi F, Danieli GA.
A novel resource for the study of genes expressed in the adult human retina.
INVEST OPHTH VIS SCI. 2000; 41(11): 3305-8
- Bortoluzzi S, D'alessi F, Romualdi C, Danieli GA.
The human adult skeletal muscle transcriptional profile reconstructed by a novel computational approach.
GENOME RES. 2000; 10(3): 344-9
- Bortoluzzi S, Danieli GA.
Towards an in silico analysis of transcription patterns.
TRENDS GENET. 1999; 15(3): 118-9
- Bortoluzzi S, Rampoldi L, Simionati B, Zimbello R, Barbon A, D'alessi F, Tiso N, Pallavicini A, Toppo S, Cannata N, Valle G, Lanfranchi G, Danieli GA.
A comprehensive, high-resolution genomic transcript map of human skeletal muscle.
GENOME RES. 1998; 8(8): 817-25
- Rampoldi L, Zimbello R, Bortoluzzi S, Tiso N, Valle G, Lanfranchi G, Danieli GA.
Chromosomal localization of four MAPK signaling cascade genes: MEK1, MEK3, MEK4 and MEKK5.
CYTOGENET CELL GENET. 1997; 78(3-4): 301-3
- Pallavicini A, Zimbello R, Tiso N, Muraro T, Rampoldi L, Bortoluzzi S, Valle G, Lanfranchi G, Danieli GA.
The preliminary transcript map of a human skeletal muscle.
HUM MOL GENET. 1997; 6(9): 1445-50
