{"id":602,"date":"2021-12-19T17:59:04","date_gmt":"2021-12-19T16:59:04","guid":{"rendered":"http:\/\/compgen.bio.unipd.it\/?page_id=602"},"modified":"2021-12-19T17:59:04","modified_gmt":"2021-12-19T16:59:04","slug":"methods-and-software","status":"publish","type":"page","link":"https:\/\/compgen.bio.unipd.it\/new\/methods-and-software\/","title":{"rendered":"Methods and software"},"content":{"rendered":"
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Methods and Software<\/h2><\/div><\/div><\/div><\/div> <\/div>\n <\/div>\n <\/div>\n\t\t\t\t\t\t\t\t\t <\/div>\n\n <\/div>\n <\/div>\n\t\t\t\t
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\"CRAFT\"<\/div>
CRAFT<\/figcaption><\/figure><\/div><\/div><\/div> <\/div>\n <\/div>\n <\/div>\n\t\t\t\t\t\t\t\t\t
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CRAFT<\/span><\/span><\/a><\/h4>
A bioinformatics software for custom prediction of circular RNA functions <\/span>-->\u00a0GitHub<\/a><\/span><\/pre><\/div><\/div><\/div><\/div>                                            <\/div>\n                                        <\/div>\n                                    <\/div>\n\t\t\t\t\t\t\t\t\t                        <\/div>\n\n                    <\/div>\n                <\/div>\n\t\t\t\t                
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\"CircIMPACT\"<\/div><\/figure><\/div><\/div><\/div>                                            <\/div>\n                                        <\/div>\n                                    <\/div>\n\t\t\t\t\t\t\t\t\t                                    
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CircIMPACT<\/span><\/span><\/a><\/h4>
An R Package to Explore Circular RNA Impact on Gene Expression and Pathways\u00a0<\/span>-->\u00a0GitHub<\/a><\/span><\/pre><\/div><\/div><\/div><\/div>                                            <\/div>\n                                        <\/div>\n                                    <\/div>\n\t\t\t\t\t\t\t\t\t                        <\/div>\n\n                    <\/div>\n                <\/div>\n\t\t\t\t                
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\"CirComPara2\"<\/div><\/figure><\/div><\/div><\/div>                                            <\/div>\n                                        <\/div>\n                                    <\/div>\n\t\t\t\t\t\t\t\t\t                                    
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CirComPara2<\/span><\/span><\/a><\/h4>
A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data\u00a0<\/span>-->\u00a0GitHub<\/a><\/span><\/pre><\/div><\/div><\/div><\/div>                                            <\/div>\n                                        <\/div>\n                                    <\/div>\n\t\t\t\t\t\t\t\t\t                        <\/div>\n\n                    <\/div>\n                <\/div>\n\t\t\t\t                
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\"IWhale\"<\/div><\/figure><\/div><\/div><\/div>                                            <\/div>\n                                        <\/div>\n                                    <\/div>\n\t\t\t\t\t\t\t\t\t                                    
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IWhale<\/span><\/span><\/a><\/h4>
iWhale - a computational pipeline based on Docker and SCons for detection and annotation of somatic variants in cancer WES data\u00a0<\/span>-->\u00a0GitHub<\/a><\/span><\/pre><\/div><\/div><\/div><\/div>                                            <\/div>\n                                        <\/div>\n                                    <\/div>\n\t\t\t\t\t\t\t\t\t                        <\/div>\n\n                    <\/div>\n                <\/div>\n\t\t\t\t                
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\"CirComPara\"<\/div><\/figure><\/div><\/div><\/div>                                            <\/div>\n                                        <\/div>\n                                    <\/div>\n\t\t\t\t\t\t\t\t\t                                    
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CirComPara<\/span><\/span><\/h4>
A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data\u00a0<\/span>-->\u00a0GitHub<\/a><\/span><\/pre><\/div><\/div><\/div><\/div>                                            <\/div>\n                                        <\/div>\n                                    <\/div>\n\t\t\t\t\t\t\t\t\t                        <\/div>\n\n                    <\/div>\n                <\/div>\n\t\t\t\t<\/div>","protected":false},"excerpt":{"rendered":"
Methods and Software CRAFT CRAFTA bioinformatics software for custom prediction of circular RNA functions –>\u00a0GitHub CircIMPACTAn R Package to Explore Circular RNA Impact on Gene Expression and Pathways\u00a0–>\u00a0GitHub CirComPara2A multi-method …<\/p>\n","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-602","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/compgen.bio.unipd.it\/new\/wp-json\/wp\/v2\/pages\/602","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/compgen.bio.unipd.it\/new\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/compgen.bio.unipd.it\/new\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/compgen.bio.unipd.it\/new\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/compgen.bio.unipd.it\/new\/wp-json\/wp\/v2\/comments?post=602"}],"version-history":[{"count":1,"href":"https:\/\/compgen.bio.unipd.it\/new\/wp-json\/wp\/v2\/pages\/602\/revisions"}],"predecessor-version":[{"id":604,"href":"https:\/\/compgen.bio.unipd.it\/new\/wp-json\/wp\/v2\/pages\/602\/revisions\/604"}],"wp:attachment":[{"href":"https:\/\/compgen.bio.unipd.it\/new\/wp-json\/wp\/v2\/media?parent=602"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}