{"id":584,"date":"2021-12-19T15:29:25","date_gmt":"2021-12-19T14:29:25","guid":{"rendered":"http:\/\/compgen.bio.unipd.it\/?page_id=584"},"modified":"2021-12-19T15:29:25","modified_gmt":"2021-12-19T14:29:25","slug":"publications","status":"publish","type":"page","link":"https:\/\/compgen.bio.unipd.it\/new\/publications\/","title":{"rendered":"Publications"},"content":{"rendered":"<div id=\"wppb-builder-container\" class=\"wppb-builder-container\">                <div  class=\"wppb-row-parent  wppb-row-1639127832963  wppb-wow fadeInLeft \"  data-wow-duration='ms' data-wow-delay='ms'  >\n\t\t\t\t\t\n\t\t\t\t\t\t\t\t\t\t\n\t\t\t\t\t\t\t\t\t\t\n\t\t\t\t\t<div class=\"wppb-container \">\n\t\t\t\t\t\t\t\t\t\t\t\t\t\n                        <div class=\"wppb-row\">\n\t\t\t\t\t\t\t                                    <div  class=\"wppb-column-parent wppb-column-parent-view wppb-col-1639127832962  \"  >\n                                        <div class=\"wppb-column\">\n\t\t\t\t\t\n\t\t\t\t\t\t\t\t\t\t\t\n                                            <div class=\"wppb-builder-addons\">\n\t\t\t\t\t\t\t\t\t\t\t\t<div class='wppb-builder-addon wppb-addon-1639127845039'  data-addon-id='1639127845039'><div class='wppb-addon'><div class=\"wppb-headline-addon\"><div class=\"wppb-headline-content\"><h2 class=\"wppb-addon-title\">Publications<\/h2><\/div><\/div><\/div><\/div>                                            <\/div>\n                                        <\/div>\n                                    <\/div>\n\t\t\t\t\t\t\t\t\t                        <\/div>\n\n                    <\/div>\n                <\/div>\n\t\t\t\t                <div  class=\"wppb-row-parent  wppb-row-1639060137297 \"  >\n\t\t\t\t\t\n\t\t\t\t\t\t\t\t\t\t\n\t\t\t\t\t\t\t\t\t\t\n\t\t\t\t\t<div class=\"wppb-container \">\n\t\t\t\t\t\t\t\t\t\t\t\t\t\n                        <div class=\"wppb-row\">\n\t\t\t\t\t\t\t                                    <div  class=\"wppb-column-parent wppb-column-parent-view wppb-col-1639060137296  \"  >\n                                        <div class=\"wppb-column\">\n\t\t\t\t\t\n\t\t\t\t\t\t\t\t\t\t\t\n                                            <div class=\"wppb-builder-addons\">\n\t\t\t\t\t\t\t\t\t\t\t\t<div class='wppb-builder-addon wppb-addon-1639060228066'  data-addon-id='1639060228066'><div class='wppb-addon'><div class=\"wppb-text-block-addon\"><div class=\"wppb-text-block-content 0\"><ul class=\"font_8\"><li>Visentin A, Gaffo E, F\u00fcrstenau M, Rogers KA, Baliakas P, Cui C, Miller C, Haferlach C, Plevova K, Oscier D, Davis Z, Nguyen-Khac F, Rigolin GM, Athanasiadou A, Baran-Marszak F, Valiente A, Terol MJ, Abrisqueta P, Espinet B, Puiggros A, Martines A, Bonaldi L, Mauro FR, Scarf\u00f2 L, Chatzikonstantinou T, Tausch E, Kreuzer KA, Kater A, Bosch F, Doubek M, Panagiotidis P, Kalashnikova O, Frezzato F, Calbretto G, Ruocco V, Orsi S, Cellini A, Angotzi F, Serafin A, Yi S, Eichhorst B, Woyach JA, Cuneo A, Ghia P, Stamatopoulos K, Trentin L, Bortoluzzi S. Clinical and transcriptomic characterization of patients with chronic lymphocytic leukemia harboring t(14;19): an ERIC study. Leukemia. 19 Sept 2025;1\u201311. doi: 10.1038\/s41375-025-02755-8<\/li><li>Calabretto G, Binatti A, Teramo A, Buratin A, Baril\u00e0 G, Gasparini VR, Vicenzetto C, Gaffo E, Rampazzo E, Orsi S, Buson E, Trimarco V, Mariotti B, Facco M, Bazzoni F, Trentin L, Semenzato G, Zambello R, Bortoluzzi S. Transcriptomic landscape of CD8+ and CD4\u2009+\u2009T-LGL leukemia revealed the distinct impact of STAT3 and STAT5B activating mutations. LEUKEMIA. 2025 Jul 28. doi: 10.1038\/s41375-025-02708-1.<\/li><li>Roncaglia E, Gaffo E, Calabretto G, F\u00fcrstenau M, Rogers KA, Baliakas P, Cui C, Miller C, Haferlach C, Plevova K, Oscier D, Davis Z, Nguyen-Khac F, Rigolin GM, Athanasiadou A, Baran-Marszak F, Valiente A, Terol MJ, Abrisqueta P, Espinet B, Puiggros A, Martines A, Bonaldi L, Mauro FR, Scarf\u00f2 L, Chatzikonstantinou T, Tausch E, Kreuzer KA, Kater A, Bosch F, Doubek M, Panagiotidis P, Kalashnikova O, Frezzato F, Ruocco V, Orsi S, Salek K, Merlo R, Caregari A, Glogovitis I, Cellini A, Angotzi F, Serafin A, Yi S, Eichhorst B, Woyach JA, Cuneo A, Ghia P, Stamatopoulos K, Trentin L, Visentin A, Bortoluzzi S. Circular RNA signature of aggressive CLL with t(14;19)(q32;q13). An ERIC study. JOURNAL OF HAEMATOLOGY &amp; ONCOLOGY, 2025 Jul 22;18(1):74. doi: 10.1186\/s13045-025-01725-y.<\/li><li>Latowska-\u0141ysiak J, Zar\u0119bska \u017b, Sajek MP, Grabowska A, Buratin A, G\u0142odowicz P, Misiorek JO, Kuczy\u0144ski K, Bortoluzzi S, \u017bywicki M, Kosi\u0144ski JG, Rybak-Wolf A, Piestrzeniewicz R, Barciszewska AM, Rolle K. Transcriptome-wide analysis of circRNA and RBP profiles and their molecular relevance for GBM. MOLECULAR ONCOLOGY 2025 Feb 26. doi: 10.1002\/1878-0261.70005.<\/li><li>Gasparini VR, Rampazzo E, Baril\u00e0 G, Buratin A, Buson E, Calabretto G, Vicenzetto C, Orsi S, Tonini A, Teramo A, Trentin L, Facco M, Semenzato G, Bortoluzzi S, Zambello R. Proteasome Inhibitors Induce Apoptosis in Ex Vivo Cells of T-Cell Prolymphocytic Leukemia. INT J MOL SCI. 2024 Dec 18;25(24):13573. doi: 10.3390\/ijms252413573.<\/li><li>Salzmann RJS, Garbin A, Gaffo E, Elia C, Martire G, Bortoluzzi S, Tondo A, Muggeo P, Sala A, Pizzi M, Pillon M, Carraro E, Lopci E, de Re V, Mascarin M, Mussolin L. Extracellular Vesicle miR-122-5p as a Prognostic Biomarker in Pediatric Classical Hodgkin Lymphoma. INT J MOL SCI. 2024 Dec 10;25(24):13243. doi: 10.3390\/ijms252413243.<\/li><li>Alessia Buratin, Bruno Palhais, Enrico Gaffo, Juliette Roels, Julie Morscio, Jolien Van Laere, Silvia Orsi, Geertruij te Kronnie, Pieter Van Vlierberghe, Panagiotis Ntziachristos and Stefania Bortoluzzi. Depletion of the RNA binding protein QKI and circular RNA dysregulation in T-cell acute lymphoblastic leukemia. HAEMATOLOGICA. 2024 Dec 5. doi: 10.3324\/haematol.2024.285971.<\/li><li>Tosi A, Parisatto B, Gaffo E, Bortoluzzi S, Rosato A. A paclitaxel-hyaluronan conjugate (ONCOFID-P-B\u2122) in patients with BCG-unresponsive carcinoma in situ of the bladder: a dynamic assessment of the tumor microenvironment. JOURNAL OF EXPERIMENTAL &amp; CLINICAL CANCER RESEARCH. 2024. Apr 10;43(1):109. doi: 10.1186\/s13046-024-03028-5.<\/li><li>Tretti Parenzan C, Molin AD, Longo G, Gaffo E, Buratin A, Cani A, Boldrin E, Serafin V, Guglielmelli P, Vannucchi AM, Cazzaniga G, Biondi A, Locatelli F, Meyer LH, Buldini B, Te Kronnie G, Bresolin S, Bortoluzzi S. Functional relevance of circRNA aberrant expression in pediatric acute leukemia with KMT2A::AFF1 fusion. BLOOD ADVANCES. 2023 Nov 29. doi: 10.1182\/bloodadvances.2023011291.<\/li><li>Vromman M, Anckaert J, Bortoluzzi S, Buratin A, Chen CY, Chu Q, Chuang TJ, Dehghannasiri R, Dieterich C, Dong X, Flicek P, Gaffo E, Gu W, He C, Hoffmann S, Izuogu O, Jackson MS, Jakobi T, Lai EC, Nuytens J, Salzman J, Santibanez-Koref M, Stadler P, Thas O, Vanden Eynde E, Verniers K, Wen G, Westholm J, Yang L, Ye CY, Yigit N, Yuan GH, Zhang J, Zhao F, Vandesompele J, Volders PJ. Large-scale benchmarking of circRNA detection tools reveals large differences in sensitivity but not in precision. NAT METHODS. 2023 Aug;20(8): 1159-1169. doi: 10.1038\/s41592-023-01944-6. Cover Article.<\/li><li>Garbin A, Contarini G, Damanti CC, Tosato A, Bortoluzzi S, Gaffo E, Pizzi M, Carraro E, Lo Nigro L, Vinti L, Pillon M, Biffi A, Lovisa F, Mussolin L. Biochem Pharmacol. MiR-146a-5p enrichment in small-extracellular vesicles of relapsed pediatric ALCL patients promotes macrophages infiltration and differentiation. BIOCHEM PHARMACOL. 2023 Aug 15;215:115747. doi: 10.1016\/j.bcp.2023.115747.<\/li><li>Damanti CC, Ferrone L, Gaffo E, Garbin A, Tosato A, Contarini G, Gallingani I, Angioni R, Molon B, Borile G, Carraro E, Pillon M, Scarmozzino F, Dei Tos AP, Pizzi M, Ciscato F, Rasola A, Biffi A, Bortoluzzi S, Lovisa F, Mussolin L. Plasma small-extracellular vesicles enriched in miR-122-5p promote disease aggressiveness in pediatric anaplastic large-cell lymphoma. CANCER COMMUNICATIONS. (Lond). 2023 May;43(5):630-634. doi: 10.1002\/cac2.12415.<\/li><li>Buratin A, Borin C, Tretti Parenzan C, Dal Molin A, Orsi S, Binatti A, Simon K, Paganin M, Serafin V, Gaffo E, Te Kronnie G, Van Vlierberghe P, Bresolin S, Bortoluzzi S. CircFBXW7 in patients with T-cell ALL: depletion sustains MYC and NOTCH activation and leukemia cell viability. EXP HEMATOL ONCOL. 2023 Jan 21;12(1): 12. doi: 10.1186\/s40164-023-00374-6.<\/li><li>Buratin A, Bortoluzzi S*, Gaffo E. Systematic benchmarking of statistical methods to assess differential expression of circular RNAs. BRIEF BIOINFORM. 2023 Jan 19;24(1): bbac612. doi: 10.1093\/bib\/bbac612. *Co-last Author<\/li><li>Dal Molin A, Tretti Parenzan C, Gaffo E, Borin C, Boldrin E, Meyer LH, Te Kronnie G, Bresolin S, Bortoluzzi S. Discovery of fusion circular RNAs in leukemia with KMT2A::AFF1 rearrangements by the new software CircFusion. BRIEF BIOINFORM. 2023 Jan 19;24(1): bbac589. doi: 10.1093\/bib\/bbac589.<br \/>Esposito MT, Hagstr\u00f6m-Andersson A, Stam RW, Bortoluzzi S. Editorial: Harnessing chemotherapy resistance and development of novel therapeutic strategies for acute leukemia with KMT2A (MLL) -gene rearrangements. FRONT PHARMACOL. 2022 Aug 8;13:977741. doi: 10.3389\/fphar.2022.977741. eCollection 2022.<\/li><li>Teramo A, Binatti A, Ciabatti E, Schiavoni G, Tarrini G, Baril\u00e0 G, Calabretto G, Vicenzetto C, Gasparini VR, Facco M, Petrini I, Grossi R, Pisanti N, Bortoluzzi S, Falini B, Tiacci E, Galimberti S, Semenzato G, Zambello R. Defining TCR\u03b3\u03b4 lymphoproliferative disorders by combined immunophenotypic and molecular evaluation. NAT COMMUN. 2022 Jun 8;13(1): 3298.<\/li><li>Buratin A, Romualdi C, Bortoluzzi S*, Gaffo E. Detecting differentially expressed circular RNAs from multiple quantification methods using a generalized linear mixed model. COMPUT STRUCT BIOTECHNOL J. 2022 May 20;20:2495-2502. *Co-last Author<\/li><li>Tombolan L, Rossi E, Binatti A, Zin A, Manicone M, Facchinetti A, Lucchetta S, Affinita MC, Bonvini P, Bortoluzzi S, Zamarchi R, Bisogno G. Clinical significance of Circulating Tumor Cells and Cell-free DNA in pediatric rhabdomyosarcoma. MOLECULAR ONCOLOGY 2022 May;16(10): 2071-2085.<\/li><li>Dal Molin A, Gaffo A, DiFilippo V, Buratin A, Tretti C, Bresolin S, Bortoluzzi S. CRAFT: a bioinformatics software for custom prediction of circular RNA functions. BRIEFINGS IN BIOINFORMATICS 2022 Jan 31. doi: 10.1093\/bib\/bbab601.<\/li><li>Enrico Gaffo, Alessia Buratin, Anna Dal Molin, Stefania Bortoluzzi, Sensitive, reliable and robust circRNA detection from RNA-seq with CirComPara2, Briefings in Bioinformatics, Volume 23, Issue 1, January 2022, bbab418, https:\/\/doi.org\/10.1093\/bib\/bbab418<\/li><li><p class=\"font_8\">Buratin A, Gaffo A, Dal Molin A, Bortoluzzi S. CircIMPACT: An R Package to Explore Circular RNA Impact on Gene Expression and Pathways. GENES 2021, 12(7), 1044.<\/p><\/li><li><p class=\"font_8\">Gaffo E, Buratin A, Dal Molin A, Bortoluzzi S. Bioinformatic Analysis of Circular RNA Expression. METHODS MOL BIOL. 2021;2348:343-370.<\/p><\/li><li><p class=\"font_8\">Agnelli L, Bortoluzzi S., Pruneri G. Bioinformatic Pipelines to Analyze lncRNAs RNAseq Data. METHODS MOL BIOL. 2021;2348:55-69.<\/p><\/li><li><p class=\"font_8\">Maura F, Agnelli L, Bortoluzzi S. Genomics of Lymphoproliferative Disease. FRONT ONCOL. 2021 Mar 17;11:660016.<\/p><\/li><li><p class=\"font_8\">Boldrin E, Gaffo E, Niedermayer A, Boer JM, Zimmermann M, Weichenhan D, Claus R, M\u00fcnch V, Sun Q, Enzenm\u00fcller S, Seyfried F, Demir S, Zinngrebe J, Cario G, Schrappe M, Den Boer ML, Plass C, Debatin KM, te Kronnie G, Bortoluzzi S*, Meyer LH MicroRNA-497\/195 is tumor-suppressive and cooperates with CDKN2A\/B in pediatric acute lymphoblastic leukemia. BLOOD 2021 Jun 7:blood.2020007591. *Co-last Author<\/p><\/li><li><p class=\"font_8\">Giussani E, Binatti A, Calabretto G, Gasparini VR, Teramo A, Vicenzetto C, Baril\u00e0 G, Facco M, Coppe A, Semenzato G, Bortoluzzi S*, Zambello R. Lack of Viral Load Within Chronic Lymphoproliferative Disorder of Natural Killer Cells: What Is Outside the Leukemic Clone? FRONT ONCOL. 2021 Jan 18;10:613570. *Co -last Author<\/p><\/li><li><p class=\"font_8\">Lovisa F, Garbin A, Crotti S, Di Battista P, Gallingani I, Damanti C, Tosato A, Carraro E, Pillon M, Mafakheri E, Romanato F, Gaffo E, Biffi A, Bortoluzzi S, Agostini M, Mussolin L. Increased Tenascin C, osteopontin and Hsp90 levels in plasmatic exosomes of pediatric ALK-positive anaplastic large cell lymphoma: new diagnostic opportunity DIAGNOSTICS 2021 11 (2), 253.<\/p><\/li><li><p class=\"font_8\">Damanti C, Gaffo E, Lovisa F, Garbin A, Di Battista P, Gallingani I, Tosato A, Pillon M, Carraro E, Mascarin M, Elia C, Biffi A, Bortoluzzi S.*, Mussolin L. Reference microRNAs to normalize small RNA qRT-PCR levels in plasmatic exosomes of pediatric hematologic malignancies. CELLS. 2021 Jan 8;10(1):101. *Corresponding and co-last Author<\/p><\/li><li><p class=\"font_8\">Dal Molin A, Hofmans M, Gaffo E, Buratin A, Cav\u00e9 H, Flotho C, de Haas V, Niemeyer CM, Stary J, Van Vlierberghe P, Philipp\u00e9 J, De Moerloose B, te Kronnie G, Bresolin S, Lammens T, Bortoluzzi S. Dysregulation of circRNAs and novel disease networks in Juvenile Myelomonocytic Leukemia. FRONT. CELL DEV. BIOL. 2021 Jan 6;8:613540.\u200b<\/p><\/li><\/ul><ul class=\"font_8\"><li><p class=\"font_8\">Buratin A, Paganin M, Gaffo E, Dal Molin A, Roels J, Germano G, Siddi MT, Serafin V, De Decker M, Gachet S, Durinck K, Speleman F, Taghon T, Te Kronnie G, Van Vlierberghe P, Bortoluzzi S. Large-scale circular RNA deregulation in T-ALL: unlocking unique ectopic expression of molecular subtypes. BLOOD ADV. 2020 Dec 8;4(23):5902-5914.<\/p><\/li><li><p class=\"font_8\">Marzollo A, Maestrini G, La Starza R, Elia L, Malfona F, Pierini T, Tretti Parenzan C, Coppe A, Bortoluzzi S, Biffi A, Mecucci C, Bresolin S, Testi AM. A novel germline variant in PIK3R1 results in SHORT syndrome associated with TAL\/LMO T-cell acute lymphoblastic leukemia. AM J HEMATOL. 2020 Dec;95(12):E335-E338.<\/p><\/li><li><p class=\"font_8\">Binatti A, Bresolin S, Bortoluzzi S, Coppe A. iWhale: a computational pipeline based on Docker and SCons for detection and annotation of somatic variants in cancer WES data. BRIEF BIOINFORM. 2020 May 20:bbaa065.<\/p><\/li><li><p class=\"font_8\">Gasparini VR, Binatti A, Coppe A, Teramo A, Vicenzetto C, Calabretto G, Baril\u00e0 G, Barizza A, Giussani E, Facco M, Mustjoki S, Semenzato G, Zambello R, Bortoluzzi S. A high definition picture of somatic mutations in chronic lymphoproliferative disorder of natural killer cells. BLOOD CANCER J. 2020 Apr 22;10(4):42. doi: 10.1038\/s41408-020-0309-2<\/p><\/li><li><p class=\"font_8\">Lovisa F, Di Battista P, Gaffo E, Damanti CC, Garbin A, Gallingani I, Carraro E, Pillon M, Biffi A, Bortoluzzi S*, Mussolin L. RNY4 in Circulating Exosomes of Patients With Pediatric Anaplastic Large Cell Lymphoma: An Active Player? FRONT ONCOL. 2020 Feb 27;10:238. doi: 10.3389\/fonc.2020.00238.<\/p><\/li><li><p class=\"font_8\">Gaffo E, Bortolomeazzi M, Bisognin A, Di Battista P, Lovisa F, Mussolin L, Bortoluzzi S. MiR&amp;moRe2: A Bioinformatics Tool to Characterize microRNAs and microRNA-Offset RNAs from Small RNA-Seq Data. INT J MOL SCI. 2020 Mar 4;21(5):1754. doi: 10.3390\/ijms21051754.\u200b<\/p><\/li><\/ul><ul class=\"font_8\"><li><p class=\"font_8\">Gaffo E, Boldrin E, Dal Molin A, Bresolin S, Bonizzato A, Trentin L, Frasson C, Debatin K-M, Meyer L, te Kronnie G, Bortoluzzi S. Circular RNA differential expression in blood cell populations and exploration of circRNA deregulation in pediatric acute lymphoblastic leukemia. SCIENTIFIC REPORTS. 2019 9: 14670. doi: 10.1038\/s41598-019-50864-z.<\/p><\/li><li><p class=\"font_8\">Lovisa F, Binatti A, Coppe A, Primerano S, Carraro E, Pillon M, Pizzi M, Guzzardo V, Buffardi S, Porta F, Farruggia P, De Santis R, Bulian P, Basso G, Lazzari E, d'Amore ESG, Bortoluzzi S, Mussolin L. A high definition picture of key genes and pathways mutated in pediatric follicular lymphoma. HAEMATOLOGICA. 2019 Feb 28. pii: haematol.2018.211631. doi: 10.3324\/haematol.2018.211631. *Co-last author.<\/p><\/li><li><p class=\"font_8\">Dal Molin A, Bresolin S, Gaffo E, Tretti C, Boldrin E, Meyer LH, Guglielmelli P, Vannucchi AM, Te Kronnie G, Bortoluzzi S. CircRNAs Are Here to Stay: A Perspective on the MLL Recombinome. FRONT GENET. 2019 Feb 13;10:88. doi:10.3389\/fgene.2019.00088.<\/p><\/li><li><p class=\"font_8\">Perilli L, Tessarollo S, Albertoni L, Curtarello M, Past\u00f2 A, Brunetti E, Fassan M, Rugge M, Indraccolo S, Amadori A, Bortoluzzi S, Zanovello P. Silencing of miR-182 is associated with modulation of tumorigenesis through apoptosis induction in an experimental model of colorectal cancer. BMC CANCER 2019 Aug; 19: 821. doi: 10.1186\/s12885-019-5982-9.<\/p><\/li><li><p class=\"font_8\">Agnelli L, Bisognin A, Todoerti K, Manzoni M, Taiana E, Galletti S, Cutrona G, Gaffo E, Bortoluzzi S, Neri A. Expanding the repertoire of miRNAs and miRNA-offset RNAs expressed in multiple myeloma by small RNA deep sequencing. BLOOD CANCER J. 2019 Feb 19;9(3):21. doi: 10.1038\/s41408-019-0184-x.\u200b<\/p><\/li><\/ul><ul class=\"font_8\"><li><p class=\"font_8\">Esposito MR, Binatti A, Pantile M, Coppe A, Mazzocco K, Longo L, Capasso M, Lasorsa VA, Luksch R, Bortoluzzi S, Tonini GP. (2018) Somatic mutations in specific and connected sub-pathways are associated to short neuroblastoma patients' survival and indicate proteins targetable at onset of disease. INT J CANCER. Jul 11. doi: 10.1002\/ijc.31748. *Co-corresponding author.<\/p><\/li><li><p class=\"font_8\"><a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/29316027\" target=\"_blank\" rel=\"noopener\">Coppe A, Nogara L, Pizzuto MS, Cani A, Cesaro S, Masetti R, Locatelli F, Te Kronnie G, Basso G, Bortoluzzi S, Bresolin S. Somatic mutations activating Wiskott-Aldrich syndrome protein concomitant with RAS pathway mutations in juvenile myelomonocytic leukemia patients. Hum Mutat. 2018 Apr.<\/a><\/p><\/li><li><p class=\"font_8\"><a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/29570818\" target=\"_blank\" rel=\"noopener\">Davoli R, Gaffo E, Zappaterra M, Bortoluzzi S, Zambonelli P. Identification of differentially expressed small RNAs and prediction of target genes in Italian Large White pigs with divergent backfat deposition. Anim Genet. 2018 Mar 23.<\/a><\/p><\/li><li><p class=\"font_8\"><a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/29411265\" target=\"_blank\" rel=\"noopener\">Salvoro C, Bortoluzzi S, Coppe A, Valle G, Feltrin E, Mostacciuolo ML, Vazza G. Rare Risk Variants Identification by Identity-by-Descent Mapping and Whole-Exome Sequencing Implicates Neuronal Development Pathways in Schizophrenia and Bipolar Disorder. Mol Neurobiol. 2018 Feb 6.<\/a>\u200b<\/p><\/li><\/ul><ul class=\"font_8\"><li><p class=\"font_8\"><a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/29126230\" target=\"_blank\" rel=\"noopener\">Bortolomeazzi M, Gaffo E, Bortoluzzi S. A survey of software tools for microRNA discovery and characterization using RNA-seq. Brief Bioinform. 2017 Nov 6<\/a><\/p><\/li><li><p class=\"font_8\"><a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/29212142\" target=\"_blank\" rel=\"noopener\">Andersson EI, Coppe A, Bortoluzzi S. A guilt-by-association mutation network in LGL leukemia. Oncotarget. 2017 Oct 9.<\/a><\/p><\/li><li><p class=\"font_8\"><a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/29485611\" target=\"_blank\" rel=\"noopener\">Bortoluzzi S, Lovisa F, Gaffo E, Mussolin L. Small RNAs in Circulating Exosomes of Cancer Patients: A Minireview. High Throughput. 2017 Oct 6.<\/a><\/p><\/li><li><p class=\"font_8\"><a href=\"http:\/\/www.nature.com\/leu\/journal\/vaop\/naam\/abs\/leu201749a.html\" target=\"_blank\" rel=\"noopener\">Coppe A, Andersson EI, Binatti A, Gasparini VR, Bortoluzzi S, Clemente M, Herling M, Maciejewski J, Mustjoki S, Bortoluzzi S. Genomic landscape characterization of large granular lymphocyte leukemia with a systems genetics approach. Leukemia. 2017 Feb 7.<\/a><\/p><\/li><li><p class=\"font_8\"><a href=\"http:\/\/www.mdpi.com\/2311-553X\/3\/1\/8\" target=\"_blank\" rel=\"noopener\">Gaffo E., Bonizzato A, te Kronnie G., Bortoluzzi S. CirComPara: a multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data. Non-Coding RNA. Special Issue: Bioinformatics Softwares and Databases for Non-Coding RNA Research. 2017, 3(1), 8.<\/a>\u200b<\/p><\/li><\/ul><ul class=\"font_8\"><li><p class=\"font_8\"><a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC5114490\/\" target=\"_blank\" rel=\"noopener\">Andersson EI, Tanahashi T, Sekiguchi N, Gasparini VR, Bortoluzzi S, Kawakami T, Matsuda K, Mitsui T, Eldfors S, Bortoluzzi S, Coppe A, Binatti A, Lagstr\u00f6m S, Ellonen P, Fukushima N, Nishina S, Senoo N, Sakai H, Nakazawa H, Kwong YL, Loughran TP, Maciejewski JP, Mustjoki S, Ishida F. High incidence of activating STAT5B mutations in CD4-positive T-cell large granular lymphocyte leukemia. Blood. 2016 Nov 17;128(20):2465-2468.<\/a><\/p><\/li><li><p class=\"font_8\"><a href=\"http:\/\/www.nature.com\/bcj\/journal\/v6\/n10\/full\/bcj201681a.html\" target=\"_blank\" rel=\"noopener\">Bonizzato A, Gaffo E, Te Kronnie G, Bortoluzzi S. CircRNAs in hematopoiesis and hematological malignancies. Blood Cancer J. 2016 Oct 14;6(10):e483.<\/a><\/p><\/li><li><p class=\"font_8\"><a href=\"http:\/\/www.impactjournals.com\/oncotarget\/index.php?journal=oncotarget&amp;page=article&amp;op=view&amp;path[]=10828&amp;pubmed-linkout=1\" target=\"_blank\" rel=\"noopener\">Montorsi L, Guizzetti F, Alecci C, Caporali A, Martello A, Atene CG, Parenti S, Pizzini S, Zanovello P, Bortoluzzi S, Ferrari S, Grande A, Zanocco-Marani T. Loss of ZFP36 expression in colorectal cancer correlates to wnt\/ \u00df-catenin activity and enhances epithelial-to-mesenchymal transition through upregulation of ZEB1, SOX9 and MACC1. Oncotarget. 2016 Sep 13;7(37):59144-59157.<\/a><\/p><\/li><li><p class=\"font_8\"><a href=\"http:\/\/www.nature.com\/bcj\/journal\/v6\/n6\/full\/bcj201647a.html\" target=\"_blank\" rel=\"noopener\">Calura E, Pizzini S, Bisognin A, Coppe A, Sales G, Gaffo E, Fanelli T, Mannarelli C, Zini R, Norfo R, Pennucci V, Manfredini R, Romualdi C, Guglielmelli P, Vannucchi AM, Bortoluzzi S. A data-driven network model of primary myelofibrosis: transcriptional and post-transcriptional alterations in CD34+ cells Blood Cancer Journal. Blood Cancer J. 2016 Jun 24;6(6):e439.<\/a><\/p><\/li><li><p class=\"font_8\"><a href=\"http:\/\/onlinelibrary.wiley.com\/doi\/10.1111\/age.12413\/full\" target=\"_blank\" rel=\"noopener\">Zambonelli, P., Gaffo, E., Bortoluzzi, S. and Davoli, R. Transcriptional profiling of subcutaneous adipose tissue in Italian Large White pigs divergent for backfat thickness. Animal Genetics. 2016 Jun;47(3):306-23.<\/a>\u200b<\/p><\/li><\/ul><ul class=\"font_8\"><li><p class=\"font_8\"><a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/26468945\" target=\"_blank\" rel=\"noopener\">Guglielmelli P., Bisognin A, Saccoman C, Mannarelli C, Coppe A, Vannucchi AM, Bortoluzzi S. Small RNA sequencing uncovers new miRNAs and moRNAs differentially expressed in normal and primary myelofibrosis CD34+ cells. PlosONE. 2015 Oct 15;10(10):e0140445. doi: 10.1371\/journal.pone.0140445. eCollection 2015.<\/a><\/p><\/li><li><p class=\"font_8\"><a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/26496024\" target=\"_blank\" rel=\"noopener\">Calura E, Bisognin A, Manzoni M, Todoerti K, Taiana E, Sales G, Morgan GJ, Tonon G, Amodio N, Tassone P, Neri A, Agnelli L, Romualdi C, Bortoluzzi S. Disentangling the microRNA regulatory milieu in multiple myeloma: integrative genomics analysis outlines mixed miRNA-TF circuits and pathway-derived networks modulated in t(4;14) patients Oncotarget. 2015 Oct 19.<\/a>\u200b<\/p><\/li><\/ul><ul class=\"font_8\"><li><p class=\"font_8\"><a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/26484092\" target=\"_blank\" rel=\"noopener\">Perilli L, Pizzini S, Bisognin A, Mandruzzato S, Biasiolo M, Facciolli A, Rossi E, Esposito G, Rugge M, Pilati P, Mocellin S, Nitti D, Bortoluzzi S, Zanovello P. Human miRNome profiling in colorectal cancer and liver metastasis development. Genom Data. 2014 Jun 27;2:184-8.<\/a><\/p><\/li><li><p class=\"font_8\"><a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/26392334\" target=\"_blank\" rel=\"noopener\">Occhi G, Barollo S, Regazzo D, Bertazza L, Galuppini F, Guzzardo V, Jaffrain-Rea ML, Vianello F, Ciato D, Ceccato F, Watutantrige-Fernando S, Bisognin A, Bortoluzzi S, Pennelli G, Boscaro M, Scaroni C, Mian C. A constitutive active MAPK\/ERK pathway due to BRAFV600E positively regulates AHR pathway in PTC Oncotarget. 2015 Oct 13;6(31):32104-14. doi: 10.18632\/oncotarget.5194.<\/a><\/p><\/li><li><p class=\"font_8\"><a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/26359356\" target=\"_blank\" rel=\"noopener\">Agostini M, Janssen KP, Kim LJ, D'Angelo E, Pizzini S, Zangrando A, Zanon C, Pastrello C, Maretto I, Digito M, Bedin C, Jurisica I, Rizzolio F, Giordano A, Bortoluzzi S, Nitti D, Pucciarelli S. An integrative approach for the identification of prognostic and predictive biomarkers in rectal cancer. Oncotarget. 2015 Oct 20;6(32):32561-74.<\/a><\/p><\/li><li><p class=\"font_8\"><a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/25815883\" target=\"_blank\" rel=\"noopener\">Biamonte F, Zolea F, Bisognin A, Di Sanzo M, Saccoman C, Scumaci D, Aversa I, Panebianco M, Faniello MC, Bortoluzzi S, Cuda G, Costanzo F. H-ferritin-regulated microRNAs modulate gene expression in K562 cells. PLoS One. 2015 Mar 27;10(3):e0122105.<\/a><\/p><\/li><li><p class=\"font_8\"><a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/25115394\" target=\"_blank\" rel=\"noopener\">Perilli L, Vicentini C, Agostini M, Pizzini S, Pizzi M, D'Angelo E, Bortoluzzi S, Mandruzzato S, Mammano E, Rugge M, Nitti D, Scarpa A, Fassan M, Zanovello P. Circulating miR-182 is a biomarker of colorectal adenocarcinoma progression. Oncotarget. 2014 Aug 30;5(16):6611-9.<\/a><\/p><\/li><li><p class=\"font_8\"><a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/25039998\" target=\"_blank\" rel=\"noopener\">Gaffo E, Zambonelli P, Bisognin A, Bortoluzzi S, Davoli R. miRNome of Italian Large White pig subcutaneous fat tissue: new miRNAs, isomiRs and moRNAs. Anim. Genet. 2014 Jul 16. doi: 10.1111\/age.12192.<\/a><\/p><\/li><li><p class=\"font_8\"><a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/25097177\" target=\"_blank\" rel=\"noopener\">Norfo R, Zini R, Pennucci V, Bianchi E, Salati S, Guglielmelli P, Bogani C, Fanelli T, Mannarelli C, Rosti V, Pietra D, Salmoiraghi S, Bisognin A, Ruberti S, Rontauroli S, Sacchi G, Prudente Z, Barosi G, Cazzola M, Rambaldi A, Bortoluzzi S, Ferrari S, Tagliafico E, Vannucchi AM, Manfredini R. miRNA-mRNA integrative analysis in primary myelofibrosis CD34+ cells unveils the role of miR-155\/JARID2 axis in abnormal megakaryopoiesis. Blood. 2014 Aug 5. 2014 Aug 5. pii: blood-2013-12-544197<\/a><\/p><\/li><li><p class=\"font_8\"><a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/24189147\" target=\"_blank\" rel=\"noopener\">Bisognin A, Pizzini S, Perilli L, Esposito G, Mocellin S, Nitti D, Zanovello P, Bortoluzzi S, Mandruzzato S. An integrative framework identifies alternative splicing events in colorectal cancer development. Mol Oncol. 2014 Feb;8(1):129-41.<\/a>\u200b<\/p><\/li><\/ul><ul class=\"font_8\"><li><p class=\"font_8\"><a href=\"http:\/\/www.biomedcentral.com\/1471-2164\/14\/741\" target=\"_blank\" rel=\"noopener\">Leite RB, Milan M, Coppe A, Bortoluzzi S, dos Anjos A, Reinhardt R, Saavedra C, Patarnello T, Cancela ML, Bargelloni L. mRNA-Seq and microarray development for the Grooved Carpet shell clam, Ruditapes decussatus: a functional approach to unravel host-parasite interaction. BMC Genomics. 2013 Oct 29;14:741.<\/a><\/p><\/li><li><p class=\"font_8\"><a href=\"http:\/\/www.biomedcentral.com\/1471-2164\/14\/589\" target=\"_blank\" rel=\"noopener\">Pizzini S, Bisognin A, Mandruzzato S, Biasiolo M, Facciolli A, Perilli L, Rossi E, Esposito G, Rugge M, Pilati P, Mocellin S, Nitti D, Bortoluzzi S, Zanovello P. Impact of microRNAs on regulatory networks and pathways in human colorectal carcinogenesis and development of metastasis. BMC Genomics 2013 Aug 29;14(1):589.<\/a><\/p><\/li><li><p class=\"font_8\"><a href=\"http:\/\/www.sciencedirect.com\/science\/article\/pii\/S1074761313002471\" target=\"_blank\" rel=\"noopener\">Sonda N, Simonato F, Peranzoni E, Cal\u00ec B, Bortoluzzi S, Bisognin A, Wang E, Marincola FM, Naldini L, Gentner B, Trautwein C, Sackett SD, Zanovello P, Molon B, Bronte V. miR-142-3p prevents macrophage differentiation during cancer-induced myelopoiesis Immunity 2013 Jun 27;38(6):1236-49.<\/a><\/p><\/li><li><p class=\"font_8\"><a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/23028497\" target=\"_blank\" rel=\"noopener\">Vidotto M, Grapputo A, Boscari E, Barbisan F, Coppe A, Grandi G, Kumar A, Congiu L. Transcriptome sequencing and de novo annotation of the critically endangered Adriatic sturgeon. BMC Genomics 2013 Jun 18;14:407.<\/a>\u200b<\/p><\/li><\/ul><ul class=\"font_8\"><li><p class=\"font_8\"><a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/23028497\" target=\"_blank\" rel=\"noopener\">Coppe A, Bortoluzzi S, Murari G, Marino IA, Zane L, Papetti C. Sequencing and characterization of striped venus transcriptome expand resources for clam fishery genetics. PLoS One 2012;7(9):e44185. doi: 10.1371\/journal.pone.0044185. Epub 2012 Sep 18.<\/a><\/p><\/li><li><p class=\"font_8\"><a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/23009661\" target=\"_blank\" rel=\"noopener\">Pujolar JM, Marino IA, Milan M, Coppe A, Maes GE, Capoccioni F, Ciccotti E, Bervoets L, Covaci A, Belpaire C, Cramb G, Patarnello T, Bargelloni L, Bortoluzzi S, Zane L. Surviving in a toxic world: transcriptomics and gene expression profiling in response to environmental pollution in the critically endangered European eel. BMC Genomics 2012 Sep 25;13(1):507.<\/a><\/p><\/li><li><p class=\"font_8\"><a href=\"http:\/\/nar.oxfordjournals.org\/content\/early\/2012\/05\/21\/nar.gks460.abstract\" target=\"_blank\" rel=\"noopener\">Bisognin A, Sales G, Coppe A, Bortoluzzi S, Romualdi C. MAGIA2: from miRNA and genes expression data integrative analysis to microRNA\u2013transcription factor mixed regulatory circuits NAR 2012 Jul;40(Web Server issue):W13-21<\/a><\/p><\/li><li><p class=\"font_8\"><a href=\"http:\/\/bloodjournal.hematologylibrary.org\/content\/early\/2012\/01\/05\/blood-2011-07-368001.abstract\" target=\"_blank\" rel=\"noopener\">Bortoluzzi S, Bisognin A, Biasolo M, Guglielmelli P, Biamonte F, Norfo R, Manfredini R, Vannucchi AM. Characterisation and discovery of novel miRNAs and moRNAs in JAK2V617F mutated SET2 cells. Blood. 2012 Mar 29;119(13):e120-30.<\/a>\u200b<\/p><\/li><\/ul><ul class=\"font_8\"><li><p class=\"font_8\"><a href=\"http:\/\/www.sciencedirect.com\/science\/article\/pii\/S1471491411000827\" target=\"_blank\" rel=\"noopener\">Bortoluzzi S, Biasiolo M, Bisognin A. microRNA-offset RNAs (moRNAs): by-product spectators or functional players? Trends In Molecular Medicine. 2011 Sep;17(9):473-4. Epub 2011 Jun 21.<\/a><\/p><\/li><li><p class=\"font_8\"><a href=\"http:\/\/www.plosone.org\/article\/info%3Adoi%2F10.1371%2Fjournal.pone.0023854\" target=\"_blank\" rel=\"noopener\">Biasiolo M, Sales G, Lionetti M, Agnelli L, Todoerti K, Bisognin A, Coppe A, Romualdi C, Neri A, Bortoluzzi S. Impact of host genes and strand selection on miRNA and miRNA* expression. PLoS One. 2011;6(8):e23854. Epub 2011 Aug 31. Epub 2011 Jun 21.<\/a><\/p><\/li><li><p class=\"font_8\"><a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/21569398\" target=\"_blank\" rel=\"noopener\">Milan M, Coppe A, Reinhardt R, Cancela LM, Leite RB, Saavedra C, Ciofi C, Chelazzi G, Patarnello T, Bortoluzzi S, Bargelloni L. Transcriptome sequencing and microarray development for the Manila clam, Ruditapes philippinarum: genomic tools for environmental monitoring. BMC Genomics.. 2011 May 12;12:234.<\/a><\/p><\/li><li><p class=\"font_8\"><a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/21333005\" target=\"_blank\" rel=\"noopener\">Lenzi L, Facchin F, Piva F, Giulietti M, Pelleri MC, Frabetti F, Vitale L, Casadei R, Canaider S, Bortoluzzi S, Coppe A, Danieli GA, Principato G, Ferrari S, Strippoli P. TRAM (Transcriptome Mapper): database-driven creation and analysis of transcriptome maps from multiple sources. BMC Genomics.. 2011 Feb 18;12(1):121.<\/a>\u200b<\/p><\/li><\/ul><ul class=\"font_8\"><li><p class=\"font_8\"><a href=\"http:\/\/www.biomedcentral.com\/1471-2164\/11\/635\/abstract\" target=\"_blank\" rel=\"noopener\">Coppe A*, Pujolar JM*, Maes GE, Larsen PF, Hansen MM, Bernatchez L, Zane L, Bortoluzzi S. (2010) Sequencing, de novo annotation and analysis of the first Anguilla anguilla transcriptome: EeelBase opens new perspectives for the study of the critically endangered European eel. BMC Genomics.. Nov 16;11(1):635.. *Equally contributing first author<\/a><\/p><\/li><li><p class=\"font_8\"><a href=\"http:\/\/nar.oxfordjournals.org\/cgi\/content\/full\/gkq423?ijkey=UsYm3CKnZZwHXu2\" target=\"_blank\" rel=\"noopener\">Sales G*, Coppe A*, Bisognin A, Biasiolo M, Bortoluzzi S, Romualdi C (2010). MAGIA, a web-based tool for MiRNA and Genes Integrated Analysis. Nucleic Acids Res. Jul 1;38 Suppl:W352-9.. *Equally contributing first author<\/a><\/p><\/li><li><p class=\"font_8\"><a href=\"http:\/\/nar.oxfordjournals.org\/cgi\/content\/full\/gkp1239v1\" target=\"_blank\" rel=\"noopener\">Sales G, Coppe A, Bicciato S, Bortoluzzi S, Romualdi C. Impact of probe annotation on the integration of miRNA-mRNA expression profiles for miRNA target detection. Nucleic Acids Res. 38(7):e97. Epub 2010 Jan 13.<\/a><a href=\"http:\/\/eproceedings.worldscinet.com\/9789814295291\/9789814295291_0042.html\" target=\"_blank\" rel=\"noopener\"><span class=\"wixGuard\">\u200b<\/span><\/a><\/p><\/li><\/ul><ul class=\"font_8\"><li><p class=\"font_8\"><a href=\"http:\/\/bloodjournal.hematologylibrary.org\/cgi\/content\/abstract\/blood-2009-08-237495v1\" target=\"_blank\" rel=\"noopener\">Lionetti M*, Biasiolo M*, Agnelli L, Todoerti K, Mosca L, Fabris S, Sales G, Lambertenghi Deliliers G, Bicciato S, Lombardi L, Bortoluzzi S, Neri A. (2009) Identification of microRNA expression patterns and definition of a microRNA\/mRNA regulatory network in distinct molecular groups of multiple myeloma. Blood. 114:20-26. *Equally contributing first author.<\/a><\/p><\/li><li><p class=\"font_8\"><a href=\"http:\/\/www.biomedcentral.com\/1471-2105\/10\/201\/abstract\" target=\"_blank\" rel=\"noopener\">Bisognin A, Coppe A, Ferrari F, Risso D, Romualdi C, Bicciato S and Bortoluzzi S. (2009) A-MADMAN: Annotation-based MicroArray Data Meta-ANalysis tool. BMC Bioinformatics. 10:201<\/a><\/p><\/li><li><p class=\"font_8\"><a href=\"http:\/\/nar.oxfordjournals.org\/cgi\/content\/full\/gkn948v1\" target=\"_blank\" rel=\"noopener\">Coppe A, Ferrari F, Bisognin A, Danieli GA, Ferrari S, Bicciato S and Bortoluzzi S. (2009) Motif discovery in promoters of genes co-localized and co-expressed during myeloid cells differentiation. Nucleic Acids Res.. 37:533.<\/a><\/p><\/li><li><p class=\"font_8\"><a href=\"http:\/\/www.biomedcentral.com\/1471-2105\/8\/446\" target=\"_blank\" rel=\"noopener\">Ferrari F, Bortoluzzi S, Coppe A, Sirota A, Safran M, Shmoish M, Ferrari S, Lancet D, Danieli GA and Bicciato S. (2007) Novel definition files for human GeneChips based on GeneAnnot. BMC BIOINFORMATICS. 8:446.<\/a><\/p><\/li><li><p class=\"font_8\"><a href=\"http:\/\/www.biomedcentral.com\/1471-2164\/8\/264\" target=\"_blank\" rel=\"noopener\">Ferrari F, Bortoluzzi S., Coppe A, Basso D, Bicciato S, Zini R, Gemelli C, Danieli Ga, Ferrari S. (2007). Genomic expression during human myelopoiesis. BMC GENOMICS. 8: 1471-2164.<\/a><\/p><\/li><li><p class=\"font_8\"><a href=\"http:\/\/www.biomedcentral.com\/1471-2105\/7\/453\" target=\"_blank\" rel=\"noopener\">Coppe A, Danieli GA, Bortoluzzi S (2006) REEF: searching REgionally Enriched Features in genomes. BMC BIOINFORMATICS. 7: 453.<\/a><\/p><\/li><li><p class=\"font_8\"><a href=\"http:\/\/www.biomedcentral.com\/1471-2164\/7\/287\" target=\"_blank\" rel=\"noopener\">Romualdi C, De Pitt\u00e0 C, Tombolan L, Bortoluzzi S, Sartori F, Rosolen A, Lanfranchi G (2006) Defining the gene expression signature of rhabdomyosarcoma by meta-analysis. BMC Genomics. 7:287<\/a><\/p><\/li><li><p class=\"font_8\"><a href=\"http:\/\/www3.interscience.wiley.com\/journal\/112206116\/\" target=\"_blank\" rel=\"noopener\">Bortoluzzi S, Scannapieco P, Cestaro A, Danieli GA, Schiaffino S. (2006) Computational reconstruction of the human skeletal muscle secretome. PROTEINS. 62: 776-792<\/a><\/p><\/li><li><p class=\"font_8\"><a href=\"http:\/\/nar.oxfordjournals.org\/cgi\/content\/full\/33\/15\/e135\" target=\"_blank\" rel=\"noopener\">Pizzi C, Bortoluzzi S, Bisognin A, Coppe A, Danieli GA. Detecting seeded motifs in DNA sequences. NUCLEIC ACIDS RES. 2005; 33(15): e135<\/a><\/p><\/li><li><p class=\"font_8\"><a href=\"http:\/\/www.biomedcentral.com\/1471-2105\/6\/121\" target=\"_blank\" rel=\"noopener\">Bortoluzzi S, Coppe A, Bisognin A, Pizzi C, Danieli GA. A Multistep Bioinformatic Approach Detects Putative Regulatory Elements In Gene Promoters. BMC BIOINFORMATICS. 2005; 6(1): 121<\/a><\/p><\/li><li><p class=\"font_8\"><a href=\"http:\/\/www.biomedcentral.com\/1471-2105\/5\/68\" target=\"_blank\" rel=\"noopener\">Bortoluzzi S, Bisognin A, Romualdi C, Danieli GA. Novel genes, possibly relevant for molecular diagnosis or therapy of human rhabdomyosarcoma, detected by genomic expression profiling. Gene. 348:65-71.<\/a><\/p><\/li><li><p class=\"font_8\"><a href=\"http:\/\/www.biomedcentral.com\/1471-2105\/5\/68\" target=\"_blank\" rel=\"noopener\">Bisognin A, Bortoluzzi S, Danieli GA. Detection of chromosomal regions showing differential gene expression in human skeletal muscle and in alveolar rhabdomyosarcoma. BMC BIOINFORMATICS. 2004; 5(1): 68.<\/a><\/p><\/li><li><p class=\"font_8\"><a href=\"http:\/\/physiolgenomics.physiology.org\/cgi\/reprint\/15\/3\/223\" target=\"_blank\" rel=\"noopener\">Bortoluzzi S, Romualdi C, Bisognin A, Danieli GA. Disease-genes and intracellular protein networks. PHYSIOL GENOMICS. 2003; 15: 223-227<\/a><\/p><\/li><li><p class=\"font_8\"><a href=\"http:\/\/physiolgenomics.physiology.org\/cgi\/content\/full\/12\/2\/159\" target=\"_blank\" rel=\"noopener\">Romualdi C, Bortoluzzi S, D'alessi F, Danieli GA. IDEG6: a web tool for detection of differentially expressed genes in multiple tag sampling experiments. PHYSIOL GENOMICS. 2003; 12(2): 159-62<\/a><\/p><\/li><li><p class=\"font_8\"><a href=\"http:\/\/www3.interscience.wiley.com\/cgi-bin\/fulltext\/118870768\/HTMLSTART\" target=\"_blank\" rel=\"noopener\">Gabellini N, Bortoluzzi S, Danieli GA, Carafoli E. Control of the Na+\/Ca2+ exchanger 3 promoter by cyclic adenosine monophosphate and Ca2+ in differentiating neurons. J NEUROCHEM. 2003; 84(2): 282-93<\/a><\/p><\/li><li><p class=\"font_8\"><a href=\"http:\/\/www.sciencedirect.com\/science?_ob=ArticleURL&amp;_udi=B6T39-470V2WF-C&amp;_user=10&amp;_rdoc=1&amp;_fmt=&amp;_orig=search&amp;_sort=d&amp;view=c&amp;_acct=C000050221&amp;_version=1&amp;_urlVersion=0&amp;_userid=10&amp;md5=ed202a688e6c11cd3f13d830933f67f3\" target=\"_blank\" rel=\"noopener\">Gabellini N, Bortoluzzi S, Danieli GA, Carafoli E. The human SLC8A3 gene and the tissue-specific Na+\/Ca2+ exchanger 3 isoforms. GENE. 2002; 298(1): 1-7<\/a><\/p><\/li><li><p class=\"font_8\"><a href=\"http:\/\/www3.interscience.wiley.com\/journal\/120778542\/abstract\" target=\"_blank\" rel=\"noopener\">Gabellini N, Bortoluzzi S, Danieli GA, Carafoli E. The gene promoter of human Na+\/Ca2+ exchanger isoform 3 (SLC8A3) is controlled by cAMP and calcium. ANN NY ACAD SCI. 2002; 976: 282-4<\/a><\/p><\/li><li><p class=\"font_8\"><a href=\"http:\/\/hmg.oxfordjournals.org\/cgi\/content\/abstract\/10\/19\/2133\" target=\"_blank\" rel=\"noopener\">Romualdi C, Bortoluzzi S, Danieli GA. Detecting differentially expressed genes in multiple tag sampling experiments: comparative evaluation of statistical tests. HUM MOL GENET. 2001; 10(19): 2133-41<\/a><\/p><\/li><li><p class=\"font_8\"><a href=\"http:\/\/compgen.bio.unipd.it\/bioinfo\/publications\/\" target=\"_blank\" rel=\"noopener\">Bortoluzzi S, D'alessi F, Romualdi C, Danieli GA. Differential expression of genes coding for ribosomal proteins in different human tissues. BIOINFORMATICS. 2001; 17(12): 1152-7<\/a><\/p><\/li><li><p class=\"font_8\"><a href=\"http:\/\/bioinformatics.oxfordjournals.org\/cgi\/content\/abstract\/17\/12\/1152\" target=\"_blank\" rel=\"noopener\">Rampazzo A, Pivotto F, Occhi G, Tiso N, Bortoluzzi S, Rowen L, Hood L, Nava A, Danieli GA. Characterization of C14orf4, a novel intronless human gene containing a polyglutamine repeat, mapped to the ARVD1 critical region. BIOCHEM BIOPH RES CO. 2000; 278(3): 766-74<\/a><\/p><\/li><li><p class=\"font_8\"><a href=\"http:\/\/www.sciencedirect.com\/science?_ob=ArticleURL&amp;_udi=B6WK6-45F4V43-5&amp;_user=10&amp;_rdoc=1&amp;_fmt=&amp;_orig=search&amp;_sort=d&amp;view=c&amp;_acct=C000050221&amp;_version=1&amp;_urlVersion=0&amp;_userid=10&amp;md5=83b56f4f21c23c048a5ddb0234fc3fb0\" target=\"_blank\" rel=\"noopener\">Bortoluzzi S, D'alessi F, Danieli GA. A computational reconstruction of the adult human heart transcriptional profile. J MOL CELL CARDIOL. 2000; 32(11): 1931-8<\/a><\/p><\/li><li><p class=\"font_8\"><a href=\"http:\/\/www.iovs.org\/cgi\/content\/abstract\/41\/11\/3305\" target=\"_blank\" rel=\"noopener\">Bortoluzzi S, D'alessi F, Danieli GA. A novel resource for the study of genes expressed in the adult human retina. 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CYTOGENET CELL GENET. 1997; 78(3-4): 301-3<\/a><\/p><\/li><li><p class=\"font_8\"><a href=\"http:\/\/hmg.oxfordjournals.org\/cgi\/content\/abstract\/6\/9\/1445\" target=\"_blank\" rel=\"noopener\">Pallavicini A, Zimbello R, Tiso N, Muraro T, Rampoldi L, Bortoluzzi S, Valle G, Lanfranchi G, Danieli GA. The preliminary transcript map of a human skeletal muscle. HUM MOL GENET. 1997; 6(9): 1445-50<\/a><\/p><\/li><\/ul><\/div><\/div><\/div><\/div>                                            <\/div>\n                                        <\/div>\n                                    <\/div>\n\t\t\t\t\t\t\t\t\t                        <\/div>\n\n                    <\/div>\n                <\/div>\n\t\t\t\t<\/div>","protected":false},"excerpt":{"rendered":"<p>Publications Visentin A, Gaffo E, F\u00fcrstenau M, Rogers KA, Baliakas P, Cui C, Miller C, Haferlach C, Plevova K, Oscier D, Davis Z, Nguyen-Khac F, Rigolin GM, Athanasiadou A, Baran-Marszak &#8230;<\/p>\n","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-584","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/compgen.bio.unipd.it\/new\/wp-json\/wp\/v2\/pages\/584","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/compgen.bio.unipd.it\/new\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/compgen.bio.unipd.it\/new\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/compgen.bio.unipd.it\/new\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/compgen.bio.unipd.it\/new\/wp-json\/wp\/v2\/comments?post=584"}],"version-history":[{"count":2,"href":"https:\/\/compgen.bio.unipd.it\/new\/wp-json\/wp\/v2\/pages\/584\/revisions"}],"predecessor-version":[{"id":586,"href":"https:\/\/compgen.bio.unipd.it\/new\/wp-json\/wp\/v2\/pages\/584\/revisions\/586"}],"wp:attachment":[{"href":"https:\/\/compgen.bio.unipd.it\/new\/wp-json\/wp\/v2\/media?parent=584"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}